Research
Cancer bioinformatics and systems biology : J. Colinge

Jeschke U, Zhang X, Kuhn C, Colinge J, Pfender K, Mayr D, Ditsch N, Harbeck N, Mahner S, Sixou S The Prognostic Impact of the Aryl Hydrocarbon Receptor (AhR) in Primary Breast Cancer Depends on the Lymph Node Status.. Int J Mol Sci. 2019;20(5). doi:10.3390/ijms20051016

Alame M, Cornillot E, Cacheux V, Tosato G, Four M, Oliveira L, Gofflot S, Delvenne P, Turtoi E, Cabello-Aguilar S, Nishiyama M, Turtoi A, Martineau V, Colinge J The molecular landscape and microenvironment of salivary duct carcinoma reveal new therapeutic opportunities. 2019-10-21. doi:10.1101/810028

Bousquet Mur E, Bernardo S, Papon L, Mancini M, Fabbrizio E, Goussard M, Ferrer I, Giry A, Quantin X, Pujol J-L, Calvayrac O, Moll H, Glasson Y, Pirot N, Turtoi A, Cańamero M, Wong K-K, Yarden Y, Casanova E, Soria J-C, Colinge J, Siebel C, Favre G, Paz-Ares L, Maraver A Notch inhibition overcomes resistance to Tyrosine Kinase Inhibitors in EGFR-driven lung adenocarcinoma. J. Clin. Invest.. Oct 31, 2019. doi:10.1172/JCI126896

Lehmann S, Hirtz C, Vialaret J, Ory M, Gras Combes G, Le Corre M, Badiou S, Cristol J-P, Hanon O, Cornillot E, Bauchet L, Gabelle A, Colinge J IN VIVO LARGE SCALE MAPPING OF PROTEIN TURNOVER IN THE HUMAN CEREBROSPINAL FLUID. Anal. Chem.. Nov 15, 2019. doi:10.1021/acs.analchem.9b03328

Beziaud L, Boullerot L, Tran T, Mansi L, Marie-Joseph E, Ravel P, Johannes L, Bayry J, Tartour E, Adotévi O Rapalog combined with CCR4 antagonist improves anticancer vaccines efficacy. Int. J. Cancer. Sep 05, 2018. doi:10.1002/ijc.31842

Stahl P, Poinsignon Y, Pouedras P, Ciubotaru V, Berry L, Emu B, Krause P, Ben Mamoun C, Cornillot E Case report of the patient source of the Babesia microti R1 reference strain and implications for travelers. J Travel Med. 2018;25(1). doi:10.1093/jtm/tax073

Duy N, Huong L, Ravel P, Huong L, Dwivedi A, Sessions O, Hou Y, Chua R, Kister G, Afelt A, Moulia C, Gubler D, Thiem V, Thanh N, Devaux C, Duong T, Hien N, Cornillot E, Gavotte L, Frutos R Valine/isoleucine variants drive selective pressure in the VP1 sequence of EV-A71 enteroviruses. BMC Infect. Dis.. 2017;17(1):333. doi:10.1186/s12879-017-2427-4

Granier C, Dariane C, Combe P, Verkarre V, Urien S, Badoual C, Roussel H, Mandavit M, Ravel P, Sibony M, Biard L, Radulescu C, Vinatier E, Benhamouda N, Peyromaure M, Oudard S, Méjean A, Timsit M-O, Gey A, Tartour E Tim-3 Expression on Tumor-Infiltrating PD-1+CD8+T Cells Correlates with Poor Clinical Outcome in Renal Cell Carcinoma. Cancer Res.. 2017;77(5):1075-1082. doi:10.1158/0008-5472.CAN-16-0274

Pham Thi K, Briant L, Gavotte L, Labbe P, Perriat-Sanguinet M, Cornillot E, Vu T, Nguyen T, Tran V, Nguyen V, Devaux C, Afelt A, Tran C, Phan T, Tran N, Frutos R Incidence of dengue and chikungunya viruses in mosquitoes and human patients in border provinces of Vietnam. Parasit Vectors. 2017;10(1):556. doi:10.1186/s13071-017-2422-z

Mousa A, Roche D, Terkawi M, Kameyama K, Kamyingkird K, Vudriko P, Salama A, Cao S, Orabi S, Khalifa H, Ahmed M, Attia M, Elkirdasy A, Nishikawa Y, Xuan X, Cornillot E Human babesiosis: Indication of a molecular mimicry between thrombospondin domains from a novel Babesia microti BmP53 protein and host platelets molecules. PLoS ONE. 2017;12(10):e0185372. doi:10.1371/journal.pone.0185372

Dwivedi A, Reynes C, Kuehn A, Roche D, Khim N, Hebrard M, Milanesi S, Rivals E, Frutos R, Menard D, Mamoun C, Colinge J, Cornillot E Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia. Malar. J.. 2017;16(1):493. doi:10.1186/s12936-017-2140-1

Azria D, Lapierre A, Gourgou S, De Ruysscher D, Colinge J, Lambin P, Brengues M, Ward T, Bentzen S, Thierens H, Rancati T, Talbot C, Vega A, Kerns S, Andreassen C, Chang-Claude J, West C, Gill C, Rosenstein B Data-Based Radiation Oncology: Design of Clinical Trials in the Toxicity Biomarkers Era. Front Oncol. 2017;7. doi:10.3389/fonc.2017.00083

Sobecki M, Mrouj K, Colinge J, Gerbe F, Jay P, Krasinska L, Dulic V, Fisher D Cell-Cycle Regulation Accounts for Variability in Ki-67 Expression Levels. Cancer Res.. 2017;77(10):2722-2734. doi:10.1158/0008-5472.CAN-16-0707

Li J, Casteels T, Frogne T, Ingvorsen C, Honoré C, Courtney M, Huber K, Schmitner N, Kimmel R, Romanov R, Sturtzel C, Lardeau C-H, Klughammer J, Farlik M, Sdelci S, Vieira A, Avolio F, Briand F, Baburin I, Májek P, Pauler F, Penz T, Stukalov A, Gridling M, Parapatics K, Barbieux C, Berishvili E, Spittler A, Colinge J, Bennett K, Hering S, Sulpice T, Bock C, Distel M, Harkany T, Meyer D, Superti-Furga G, Collombat P, Hecksher-Sřrensen J, Kubicek S Artemisinins Target GABAAReceptor Signaling and Impair ? Cell Identity. Cell. 2017;168(1-2):86-100.e15. doi:10.1016/j.cell.2016.11.010

Licciardello M, Ringler A, Markt P, Klepsch F, Lardeau C-H, Sdelci S, Schirghuber E, Müller A, Caldera M, Wagner A, Herzog R, Penz T, Schuster M, Boidol B, Dürnberger G, Folkvaljon Y, Stattin P, Ivanov V, Colinge J, Bock C, Kratochwill K, Menche J, Bennett K, Kubicek S A combinatorial screen of the CLOUD uncovers a synergy targeting the androgen receptor. Nat. Chem. Biol.. 2017;13(7):771-778. doi:10.1038/nchembio.2382

Dia N, Lavie L, Faye N, Metenier G, Yeramian E, Duroure C, Toguebaye B, Frutos R, Niang M, Vivares C, Ben Mamoun C, Cornillot E Subtelomere organization in the genome of the microsporidian Encephalitozoon cuniculi: patterns of repeated sequences and physicochemical signatures. BMC genomics. 2016;17. doi:10.1186/s12864-015-1920-7

Beziaud L, Mansi L, Ravel P, Lauret Marie-Joseph E, Laheurte C, Rangan L, Bonnefoy F, Pallandre J, Boullerot L, Gamonet C, Vrecko S, Queiroz L, Maurina T, Mouillet G, Nguyen Tan Hon T, Curtit E, Royer B, Gaugler B, Bayry J, Tartour E, Thierry-Vuillemin A, Pivot X, Borg C, Godet Y, Adotevi O Rapalogs efficacy relies on the modulation of antitumor T cell immunity. Cancer research. May 17 2016. doi:10.1158/0008-5472.CAN-15-2452

Dwivedi A, Khim N, Reynes C, Ravel P, Ma L, Tichit M, Bourchier C, Kim S, Dourng D, Khean C, Chim P, Siv S, Frutos R, Lek D, Mercereau-Puijalon O, Ariey F, Menard D, Cornillot E Plasmodium falciparum parasite population structure and gene flow associated to anti-malarial drugs resistance in Cambodia. Malaria journal. 2016;15. doi:10.1186/s12936-016-1370-y

Martins R, Maier J, Gorki A, Huber K, Sharif O, Starkl P, Saluzzo S, Quattrone F, Gawish R, Lakovits K, Aichinger M, Radic-Sarikas B, Lardeau C, Hladik A, Korosec A, Brown M, Vaahtomeri K, Duggan M, Kerjaschki D, Esterbauer H, Colinge J, Eisenbarth S, Decker T, Bennett K, Kubicek S, Sixt M, Superti-Furga G, Knapp S Heme drives hemolysis-induced susceptibility to infection via disruption of phagocyte functions. Nature immunology. 2016;17. doi:10.1038/ni.3590

Silva J, Cornillot E, McCracken C, Usmani-Brown S, Dwivedi A, Ifeonu O, Crabtree J, Gotia H, Virji A, Reynes C, Colinge J, Kumar V, Lawres L, Pazzi J, Pablo J, Hung C, Brancato J, Kumari P, Orvis J, Tretina K, Chibucos M, Ott S, Sadzewicz L, Sengamalay N, Shetty A, Su Q, Tallon L, Fraser C, Frutos R, Molina D, Krause P, Ben Mamoun C Genome-wide diversity and gene expression profiling of Babesia microti isolates identify polymorphic genes that mediate host-pathogen interactions. Scientific reports. 2016;6. doi:10.1038/srep35284

Hart R, Cornillot E, Abraham A, Molina E, Nation C, Ben Mamoun C, Aly A Genetic Characterization of Plasmodium Putative Pantothenate Kinase Genes Reveals Their Essential Role in Malaria Parasite Transmission to the Mosquito. Scientific reports. 2016;6. doi:10.1038/srep33518

Cornillot E, Dassouli A, Pachikara N, Lawres L, Renard I, Francois C, Randazzo S, Bres V, Garg A, Brancato J, Pazzi J, Pablo J, Hung C, Teng A, Shandling A, Huynh V, Krause P, Lepore T, Delbecq S, Hermanson G, Liang X, Williams S, Molina D, Ben Mamoun C A targeted immunomic approach identifies diagnostic antigens in the human pathogen Babesia microti. Transfusion. May 17 2016. doi:10.1111/trf.13640

Mazouzi A, Stukalov A, Muller A, Chen D, Wiedner M, Prochazkova J, Chiang S, Schuster M, Breitwieser F, Pichlmair A, El-Khamisy S, Bock C, Kralovics R, Colinge J, Bennett K, Loizou J A Comprehensive Analysis of the Dynamic Response to Aphidicolin-Mediated Replication Stress Uncovers Targets for ATM and ATMIN. Cell reports. Apr 14 2016. doi:10.1016/j.celrep.2016.03.077

Bourgier C, Colinge J, Ailleres N, Fenoglietto P, Brengues M, Pelegrin A, Azria D [Radiomics: Definition and clinical development]. Cancer radiotherapie : journal de la Societe francaise de radiotherapie oncologique. 2015;19. doi:10.1016/j.canrad.2015.06.008

Herdy B, Karonitsch T, Vladimer G, Tan C, Stukalov A, Trefzer C, Bigenzahn J, Theil T, Holinka J, Kiener H, Colinge J, Bennett K, Superti-Furga G The RNA-binding protein HuR/ELAVL1 regulates IFN-beta mRNA abundance and the type I IFN response. European journal of immunology. 2015;45. doi:10.1002/eji.201444979



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