Borg J-P, Colinge J, Ravel P Modular response analysis reformulated as a multilinear regression problem. Bioinformatics. 2023-04-06. doi:10.1093/bioinformatics/btad166
Villemin J-P, Bassaganyas L, Pourquier D, Boissière F, Cabello-Aguilar S, Crapez E, Tanos R, Cornillot E, Turtoi A, Colinge J Inferring ligand-receptor cellular networks from bulk and spatial transcriptomic datasets with BulkSignalR. Nucleic Acids Res. 2023-05-05. doi:10.1093/nar/gkad352
Sauer L, Canovas R, Roche D, Shams-Eldin H, Ravel P, Colinge J, Schwarz R, Ben Mamoun C, Rivals E, Cornillot E FT-GPI, a highly sensitive and accurate predictor of GPI-anchored proteins, reveals the composition and evolution of the GPI proteome in Plasmodium species. Malar J. 2023;22(1):27. doi:10.1186/s12936-022-04430-0
Rabia E, Garambois V, Dhommée C, Larbouret C, Lajoie L, Buscail Y, Jimenez-Dominguez G, Choblet-Thery S, Liaudet-Coopman E, Cerutti M, Jarlier M, Ravel P, Gros L, Pirot N, Thibault G, Zhukovsky E, Gérard P-E, Pèlegrin A, Colinge J, Chardès T Design and selection of optimal ErbB-targeting bispecific antibodies in pancreatic cancer. Front Immunol. 2023;14. doi:10.3389/fimmu.2023.1168444
Giguelay A, Turtoi E, Khelaf L, Tosato G, Dadi I, Chastel T, Poul M-A, Pratlong M, Nicolescu S, Severac D, Adenis A, Sgarbura O, Carrère S, Rouanet P, Ychou M, Pourquier D, Colombo P-E, Turtoi A, Colinge J The landscape of cancer-associated fibroblasts in colorectal cancer liver metastases. Theranostics. 2022;12(17):7624-7639. doi:10.7150/thno.72853
Logeay R, Géminard C, Lassus P, Rodríguez-Vázquez M, Kantar D, Heron-Milhavet L, Fischer B, Bray S, Colinge J, Djiane A Mechanisms underlying the cooperation between loss of epithelial polarity and Notch signaling during neoplastic growth in Drosophila. Development. 2022;149(3):dev200110. doi:10.1242/dev.200110
Lopez-Crapez E, Costa L, Tosato G, Ramos J, Mazard T, Guiramand J, Thierry A, Colinge J, Milhiet P-E Mechanical signatures of human colon cancers. Sci Rep. 2022;12(1):12475. doi:10.1038/s41598-022-16669-3
Chiavarina B, Ronca R, Otaka Y, Sutton R, Rezzola S, Yokobori T, Chiodelli P, Souche R, Pourquier D, Maraver A, Faa G, Khellaf L, Turtoi E, Oyama T, Bellahcène A, Detry O, Delvenne P, Castronovo V, Nishiyama M, Turtoi A Fibroblast-derived prolargin is a tumor suppressor in hepatocellular carcinoma. Oncogene. 2022;41(10):1410-1420. doi:10.1038/s41388-021-02171-z
Tosato G, Rivière B, Valats J-C, Debourdeau A, Flori N, Pourquier D, Fabre J-M, Assenat E, Colinge J, Turtoi A Detection of soluble biomarkers of pancreatic cancer in endoscopic ultrasound-guided fine-needle aspiration samples. Endoscopy. 2022;54(5):503-508. doi:10.1055/a-1550-2503
Mekedem M, Ravel P, Colinge J Application of modular response analysis to medium- to large-size biological systems. PLoS Comput Biol. 2022;18(4):e1009312. doi:10.1371/journal.pcbi.1009312
Renosi F, Roggy A, Giguelay A, Soret L, Viailly P-J, Cheok M, Biichle S, Angelot-Delettre F, Asnafi V, Macintyre E, Geffroy S, Callanan M, Petrella T, Deconinck E, Daguindau E, Harrivel V, Bouyer S, Salaun V, Saussoy P, Feuillard J, Fuseau P, Saas P, Adotévi O, Jardin F, Ferrand C, Preudhomme C, Colinge J, Roumier C, Garnache-Ottou F Transcriptomic and genomic heterogeneity in blastic plasmacytoid dendritic cell neoplasms: from ontogeny to oncogenesis. Blood Adv. 2021;5(5):1540-1551. doi:10.1182/bloodadvances.2020003359
Cornillot E, Cacheux V, Rigau V, Costes-Martineau V, Lacheretz-Szablewski V, Colinge J The immune contexture of primary central nervous system diffuse large B cell lymphoma associates with patient survival and specific cell signaling. Theranostics. 2021;11(8):3565-3579. doi:10.7150/thno.54343
Kantar D, Mur E, Mancini M, Slaninova V, Salah Y, Costa L, Forest E, Lassus P, Géminard C, Boissière-Michot F, Orsetti B, Theillet C, Colinge J, Benistant C, Maraver A, Heron-Milhavet L, Djiane A MAGI1 inhibits the AMOTL2/p38 stress pathway and prevents luminal breast tumorigenesis. Sci Rep. 2021;11(1):5752. doi:10.1038/s41598-021-85056-1
Jimenez-Dominguez G, Ravel P, Jalaguier S, Cavaillès V, Colinge J An R package for generic modular response analysis and its application to estrogen and retinoic acid receptor crosstalk. Sci Rep. 2021;11(1):7272. doi:10.1038/s41598-021-86544-0
Alame M, Cornillot E, Cacheux V, Tosato G, Four M, Oliveira L, Gofflot S, Delvenne P, Turtoi E, Cabello-Aguilar S, Nishiyama M, Turtoi A, Martineau V, Colinge J The molecular landscape and microenvironment of salivary duct carcinoma reveal new therapeutic opportunities. 2020;10(10):4383-4394. doi:10.7150/thno.42986
Cabello-Aguilar S, Alame M, Kon-Sun-Tack F, Fau C, Lacroix M, Colinge J SingleCellSignalR: inference of intercellular networks from single-cell transcriptomics. Nucleic Acids Res.. Mar 20, 2020. doi:10.1093/nar/gkaa183
Tanos R, Tosato G, Al Amir Dache Z, Pique Lasorsa L, Tousch G, El Messaoudi S, Meddeb R, Diab Assaf M, Ychou M, Pezet D, Gagnière J, Colombo P-E, Jacot W, Dupuy M, Adenis A, Mazard T, Mollevi C, Sayagués J, Colinge J, Thierry A Machine Learning-Assisted Evaluation of Circulating DNA Quantitative Analysis for Cancer Screening. Adv Sci (Weinh). 2020;7(18):2000486. doi:10.1002/advs.202000486
Jeschke U, Zhang X, Kuhn C, Colinge J, Pfender K, Mayr D, Ditsch N, Harbeck N, Mahner S, Sixou S The Prognostic Impact of the Aryl Hydrocarbon Receptor (AhR) in Primary Breast Cancer Depends on the Lymph Node Status.. Int J Mol Sci. 2019;20(5). doi:10.3390/ijms20051016
Bousquet Mur E, Bernardo S, Papon L, Mancini M, Fabbrizio E, Goussard M, Ferrer I, Giry A, Quantin X, Pujol J-L, Calvayrac O, Moll H, Glasson Y, Pirot N, Turtoi A, Cañamero M, Wong K-K, Yarden Y, Casanova E, Soria J-C, Colinge J, Siebel C, Favre G, Paz-Ares L, Maraver A Notch inhibition overcomes resistance to Tyrosine Kinase Inhibitors in EGFR-driven lung adenocarcinoma. J. Clin. Invest.. Oct 31, 2019. doi:10.1172/JCI126896
Lehmann S, Hirtz C, Vialaret J, Ory M, Combes G, Corre M, Badiou S, Cristol J-P, Hanon O, Cornillot E, Bauchet L, Gabelle A, Colinge J In Vivo Large-Scale Mapping of Protein Turnover in Human Cerebrospinal Fluid. Anal. Chem.. 2019;91(24):15500-15508. doi:10.1021/acs.analchem.9b03328
Beziaud L, Boullerot L, Tran T, Mansi L, Marie-Joseph E, Ravel P, Johannes L, Bayry J, Tartour E, Adotévi O Rapalog combined with CCR4 antagonist improves anticancer vaccines efficacy. Int. J. Cancer. Sep 05, 2018. doi:10.1002/ijc.31842
Stahl P, Poinsignon Y, Pouedras P, Ciubotaru V, Berry L, Emu B, Krause P, Ben Mamoun C, Cornillot E Case report of the patient source of the Babesia microti R1 reference strain and implications for travelers. J Travel Med. 2018;25(1). doi:10.1093/jtm/tax073
Duy N, Huong L, Ravel P, Huong L, Dwivedi A, Sessions O, Hou Y, Chua R, Kister G, Afelt A, Moulia C, Gubler D, Thiem V, Thanh N, Devaux C, Duong T, Hien N, Cornillot E, Gavotte L, Frutos R Valine/isoleucine variants drive selective pressure in the VP1 sequence of EV-A71 enteroviruses. BMC Infect. Dis.. 2017;17(1):333. doi:10.1186/s12879-017-2427-4
Granier C, Dariane C, Combe P, Verkarre V, Urien S, Badoual C, Roussel H, Mandavit M, Ravel P, Sibony M, Biard L, Radulescu C, Vinatier E, Benhamouda N, Peyromaure M, Oudard S, Méjean A, Timsit M-O, Gey A, Tartour E Tim-3 Expression on Tumor-Infiltrating PD-1+CD8+T Cells Correlates with Poor Clinical Outcome in Renal Cell Carcinoma. Cancer Res.. 2017;77(5):1075-1082. doi:10.1158/0008-5472.CAN-16-0274
Pham Thi K, Briant L, Gavotte L, Labbe P, Perriat-Sanguinet M, Cornillot E, Vu T, Nguyen T, Tran V, Nguyen V, Devaux C, Afelt A, Tran C, Phan T, Tran N, Frutos R Incidence of dengue and chikungunya viruses in mosquitoes and human patients in border provinces of Vietnam. Parasit Vectors. 2017;10(1):556. doi:10.1186/s13071-017-2422-z
Institut de Recherche en Cancérologie de
