Recherche
Bioinformatique et biologie des systèmes du cancer : J. Colinge

Liste des Publications

Renosi F, Roggy A, Giguelay A, Soret L, Viailly P-J, Cheok M, Biichle S, Angelot-Delettre F, Asnafi V, Macintyre E, Geffroy S, Callanan M, Petrella T, Deconinck E, Daguindau E, Harrivel V, Bouyer S, Salaun V, Saussoy P, Feuillard J, Fuseau P, Saas P, Adotévi O, Jardin F, Ferrand C, Preudhomme C, Colinge J, Roumier C, Garnache-Ottou F Transcriptomic and genomic heterogeneity in blastic plasmacytoid dendritic cell neoplasms: from ontogeny to oncogenesis. Blood Adv. 2021;5(5):1540-1551. doi:10.1182/bloodadvances.2020003359

Cornillot E, Cacheux V, Rigau V, Costes-Martineau V, Lacheretz-Szablewski V, Colinge J The immune contexture of primary central nervous system diffuse large B cell lymphoma associates with patient survival and specific cell signaling. Theranostics. 2021;11(8):3565-3579. doi:10.7150/thno.54343

Kantar D, Mur E, Mancini M, Slaninova V, Salah Y, Costa L, Forest E, Lassus P, Géminard C, Boissière-Michot F, Orsetti B, Theillet C, Colinge J, Benistant C, Maraver A, Heron-Milhavet L, Djiane A MAGI1 inhibits the AMOTL2/p38 stress pathway and prevents luminal breast tumorigenesis. Sci Rep. 2021;11(1):5752. doi:10.1038/s41598-021-85056-1

Mekedem M, Ravel P, Colinge J Application of Modular Response Analysis to Medium- to Large-Size Biological Systems. 2021-07-27.

Jimenez-Dominguez G, Ravel P, Jalaguier S, Cavaillès V, Colinge J An R package for generic modular response analysis and its application to estrogen and retinoic acid receptor crosstalk. Sci Rep. 2021;11(1):7272. doi:10.1038/s41598-021-86544-0

Alame M, Cornillot E, Cacheux V, Tosato G, Four M, Oliveira L, Gofflot S, Delvenne P, Turtoi E, Cabello-Aguilar S, Nishiyama M, Turtoi A, Martineau V, Colinge J The molecular landscape and microenvironment of salivary duct carcinoma reveal new therapeutic opportunities. 2020;10(10):4383-4394. doi:10.7150/thno.42986

Cabello-Aguilar S, Alame M, Kon-Sun-Tack F, Fau C, Lacroix M, Colinge J SingleCellSignalR: inference of intercellular networks from single-cell transcriptomics. Nucleic Acids Res.. Mar 20, 2020. doi:10.1093/nar/gkaa183

Tanos R, Tosato G, Al Amir Dache Z, Pique Lasorsa L, Tousch G, El Messaoudi S, Meddeb R, Diab Assaf M, Ychou M, Pezet D, Gagnière J, Colombo P-E, Jacot W, Dupuy M, Adenis A, Mazard T, Mollevi C, Sayagués J, Colinge J, Thierry A Machine Learning-Assisted Evaluation of Circulating DNA Quantitative Analysis for Cancer Screening. Adv Sci (Weinh). 2020;7(18):2000486. doi:10.1002/advs.202000486

Jeschke U, Zhang X, Kuhn C, Colinge J, Pfender K, Mayr D, Ditsch N, Harbeck N, Mahner S, Sixou S The Prognostic Impact of the Aryl Hydrocarbon Receptor (AhR) in Primary Breast Cancer Depends on the Lymph Node Status.. Int J Mol Sci. 2019;20(5). doi:10.3390/ijms20051016

Bousquet Mur E, Bernardo S, Papon L, Mancini M, Fabbrizio E, Goussard M, Ferrer I, Giry A, Quantin X, Pujol J-L, Calvayrac O, Moll H, Glasson Y, Pirot N, Turtoi A, Cañamero M, Wong K-K, Yarden Y, Casanova E, Soria J-C, Colinge J, Siebel C, Favre G, Paz-Ares L, Maraver A Notch inhibition overcomes resistance to Tyrosine Kinase Inhibitors in EGFR-driven lung adenocarcinoma. J. Clin. Invest.. Oct 31, 2019. doi:10.1172/JCI126896

Lehmann S, Hirtz C, Vialaret J, Ory M, Combes G, Corre M, Badiou S, Cristol J-P, Hanon O, Cornillot E, Bauchet L, Gabelle A, Colinge J In Vivo Large-Scale Mapping of Protein Turnover in Human Cerebrospinal Fluid. Anal. Chem.. 2019;91(24):15500-15508. doi:10.1021/acs.analchem.9b03328

Beziaud L, Boullerot L, Tran T, Mansi L, Marie-Joseph E, Ravel P, Johannes L, Bayry J, Tartour E, Adotévi O Rapalog combined with CCR4 antagonist improves anticancer vaccines efficacy. Int. J. Cancer. Sep 05, 2018. doi:10.1002/ijc.31842

Stahl P, Poinsignon Y, Pouedras P, Ciubotaru V, Berry L, Emu B, Krause P, Ben Mamoun C, Cornillot E Case report of the patient source of the Babesia microti R1 reference strain and implications for travelers. J Travel Med. 2018;25(1). doi:10.1093/jtm/tax073

Duy N, Huong L, Ravel P, Huong L, Dwivedi A, Sessions O, Hou Y, Chua R, Kister G, Afelt A, Moulia C, Gubler D, Thiem V, Thanh N, Devaux C, Duong T, Hien N, Cornillot E, Gavotte L, Frutos R Valine/isoleucine variants drive selective pressure in the VP1 sequence of EV-A71 enteroviruses. BMC Infect. Dis.. 2017;17(1):333. doi:10.1186/s12879-017-2427-4

Granier C, Dariane C, Combe P, Verkarre V, Urien S, Badoual C, Roussel H, Mandavit M, Ravel P, Sibony M, Biard L, Radulescu C, Vinatier E, Benhamouda N, Peyromaure M, Oudard S, Méjean A, Timsit M-O, Gey A, Tartour E Tim-3 Expression on Tumor-Infiltrating PD-1+CD8+T Cells Correlates with Poor Clinical Outcome in Renal Cell Carcinoma. Cancer Res.. 2017;77(5):1075-1082. doi:10.1158/0008-5472.CAN-16-0274

Pham Thi K, Briant L, Gavotte L, Labbe P, Perriat-Sanguinet M, Cornillot E, Vu T, Nguyen T, Tran V, Nguyen V, Devaux C, Afelt A, Tran C, Phan T, Tran N, Frutos R Incidence of dengue and chikungunya viruses in mosquitoes and human patients in border provinces of Vietnam. Parasit Vectors. 2017;10(1):556. doi:10.1186/s13071-017-2422-z

Mousa A, Roche D, Terkawi M, Kameyama K, Kamyingkird K, Vudriko P, Salama A, Cao S, Orabi S, Khalifa H, Ahmed M, Attia M, Elkirdasy A, Nishikawa Y, Xuan X, Cornillot E Human babesiosis: Indication of a molecular mimicry between thrombospondin domains from a novel Babesia microti BmP53 protein and host platelets molecules. PLoS ONE. 2017;12(10):e0185372. doi:10.1371/journal.pone.0185372

Dwivedi A, Reynes C, Kuehn A, Roche D, Khim N, Hebrard M, Milanesi S, Rivals E, Frutos R, Menard D, Mamoun C, Colinge J, Cornillot E Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia. Malar. J.. 2017;16(1):493. doi:10.1186/s12936-017-2140-1

Azria D, Lapierre A, Gourgou S, De Ruysscher D, Colinge J, Lambin P, Brengues M, Ward T, Bentzen S, Thierens H, Rancati T, Talbot C, Vega A, Kerns S, Andreassen C, Chang-Claude J, West C, Gill C, Rosenstein B Data-Based Radiation Oncology: Design of Clinical Trials in the Toxicity Biomarkers Era. Front Oncol. 2017;7. doi:10.3389/fonc.2017.00083

Sobecki M, Mrouj K, Colinge J, Gerbe F, Jay P, Krasinska L, Dulic V, Fisher D Cell-Cycle Regulation Accounts for Variability in Ki-67 Expression Levels. Cancer Res.. 2017;77(10):2722-2734. doi:10.1158/0008-5472.CAN-16-0707

Li J, Casteels T, Frogne T, Ingvorsen C, Honoré C, Courtney M, Huber K, Schmitner N, Kimmel R, Romanov R, Sturtzel C, Lardeau C-H, Klughammer J, Farlik M, Sdelci S, Vieira A, Avolio F, Briand F, Baburin I, Májek P, Pauler F, Penz T, Stukalov A, Gridling M, Parapatics K, Barbieux C, Berishvili E, Spittler A, Colinge J, Bennett K, Hering S, Sulpice T, Bock C, Distel M, Harkany T, Meyer D, Superti-Furga G, Collombat P, Hecksher-Sørensen J, Kubicek S Artemisinins Target GABAAReceptor Signaling and Impair ? Cell Identity. Cell. 2017;168(1-2):86-100.e15. doi:10.1016/j.cell.2016.11.010

Licciardello M, Ringler A, Markt P, Klepsch F, Lardeau C-H, Sdelci S, Schirghuber E, Müller A, Caldera M, Wagner A, Herzog R, Penz T, Schuster M, Boidol B, Dürnberger G, Folkvaljon Y, Stattin P, Ivanov V, Colinge J, Bock C, Kratochwill K, Menche J, Bennett K, Kubicek S A combinatorial screen of the CLOUD uncovers a synergy targeting the androgen receptor. Nat. Chem. Biol.. 2017;13(7):771-778. doi:10.1038/nchembio.2382

Dia N, Lavie L, Faye N, Metenier G, Yeramian E, Duroure C, Toguebaye B, Frutos R, Niang M, Vivares C, Ben Mamoun C, Cornillot E Subtelomere organization in the genome of the microsporidian Encephalitozoon cuniculi: patterns of repeated sequences and physicochemical signatures. BMC genomics. 2016;17. doi:10.1186/s12864-015-1920-7

Beziaud L, Mansi L, Ravel P, Lauret Marie-Joseph E, Laheurte C, Rangan L, Bonnefoy F, Pallandre J, Boullerot L, Gamonet C, Vrecko S, Queiroz L, Maurina T, Mouillet G, Nguyen Tan Hon T, Curtit E, Royer B, Gaugler B, Bayry J, Tartour E, Thierry-Vuillemin A, Pivot X, Borg C, Godet Y, Adotevi O Rapalogs efficacy relies on the modulation of antitumor T cell immunity. Cancer research. May 17 2016. doi:10.1158/0008-5472.CAN-15-2452

Dwivedi A, Khim N, Reynes C, Ravel P, Ma L, Tichit M, Bourchier C, Kim S, Dourng D, Khean C, Chim P, Siv S, Frutos R, Lek D, Mercereau-Puijalon O, Ariey F, Menard D, Cornillot E Plasmodium falciparum parasite population structure and gene flow associated to anti-malarial drugs resistance in Cambodia. Malaria journal. 2016;15. doi:10.1186/s12936-016-1370-y



© Institut de Recherche en Cancérologie de Montpellier - 2011 - Tous droits réservés - Mentions légales - Connexion - Conception : ID Alizés